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ERX4144819: Illumina MiSeq sequencing
1 ILLUMINA (Illumina MiSeq) run: 34,781 spots, 5.7M bases, 2.2Mb downloads

Submitted by: THE AUSTRALIAN WINE RESEARCH INSTITUTE
Study: Comparative genome analysis proposes three new Aureobasidium species isolated from grape juice
show Abstracthide Abstract
Aureobasidium pullulans is the most abundant and ubiquitous species within the genus and is also considered a core component of the grape juice microflora. So far, a small number of other Aureobasidium species have been reported, that in contrast to A. pullulans, appear far more constrained to specific habitats. It is unknown whether grape juice is a reservoir of novel Aureobasidium species, overlooked in the course of conventional morphological and meta-barcoding analyses. In this study, eight isolates from grape juice taxonomically classified as Aureobasidium through ITS sequencing were subjected to whole-genome phylogenetic, synteny and nucleotide identity analyses, which revealed three isolates to likely represent newly discovered Aureobasidium species. Analyses of ITS and metagenomic sequencing datasets show that these species can be present in grape juice samples from different locations and vintages. Functional annotation revealed the Aureobasidium isolates possess the genetic potential to support growth on the surface of plants and grapes. However, the loss of several genes associated with tolerance to diverse environmental stresses suggest a more constrained ecological range than A. pullulans.
Sample: Chardonnay grape juice sample from Margaret River, Australia
SAMEA6864432 • ERS4592007 • All experiments • All runs
Organism: metagenome
Library:
Name: unspecified
Instrument: Illumina MiSeq
Strategy: AMPLICON
Source: GENOMIC
Selection: PCR
Layout: SINGLE
Runs: 1 run, 34,781 spots, 5.7M bases, 2.2Mb
Run# of Spots# of BasesSizePublished
ERR418139734,7815.7M2.2Mb2020-09-30

ID:
12007637

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